The LeBauer ApproachTHE LEBAUER APPROACH
ServicesProjectsPublicationsAboutContact
Services Projects Publications About Get in touch
  • Recent & Upcoming Talks
    • Example Talk
  • Blog
    • Building a Data Science Support Team in Academia: People, Communication, Mission
    • TERRA-REF: Building the World's Largest Open-Access Plant Phenotyping Dataset
    • Open Data and Reusable Software: How We Connected Sensors, Traits, and Genomes in TERRA-REF
    • Bayesian Calibration for Ecosystem Models: A Practitioner's Guide
    • The Four Ts: Tools, Translators, Tutorials, and Templates for Sharing Agricultural Algorithms
    • Why Open Science Is a Competitive Advantage in Agriculture
    • Five Things I Learned Building Carbon MRV Pipelines
    • What I Mean by a Modeling Sprint
    • Site refresh: focused consulting MVP
  • Projects
    • MAGiC
    • PEcAn
    • Indigo CAR-SEP validation report
    • TERRA-REF
    • BETYdb
    • SIPNET
  • Blog
    • Site refresh: focused consulting MVP
  • Publications
    • CCT data science group procedures
    • Adoption of unoccupied aerial systems in agricultural research
    • Data and code from: Unoccupied aerial systems adoption in agricultural research
    • Predicting spring phenology in deciduous broadleaf forests: NEON phenology forecasting community challenge
    • Automating methods for estimating metabolite volatility
    • Early detection of drought stress in durum wheat using hyperspectral imaging and photosystem sensing
    • ESS-DIVE unoccupied aerial systems (UAS) reporting format v1
    • Increasing racial diversity in the north american plant phenotyping network through conference participation support
    • Bison-fly: an open-source UAV pipeline for plant breeding data collection
    • Data from: expanded potential growing region and yield increase for agave americana with future climate
    • Data-driven artificial intelligence for calibration of hyperspectral big data
    • Review and synthesis: the promise of big soil data, moving current practices towards future potential
    • Data and code from: on-farm land management strategies and production challenges in United States organic agricultural systems
    • What does TERRA-REF’s high resolution, multi sensor plant sensing public domain data offer the computer vision community?
    • Ten simple rules to cultivate transdisciplinary collaboration in data science
    • A reporting format for leaf-level gas exchange data and metadata
    • Expanded potential growing region and yield increase for agave americana with future climate
    • Global wheat head detection 2021: an improved dataset for benchmarking wheat head detection methods
    • On-farm land management strategies and production challenges in United States organic agricultural systems
    • An open, scalable, and flexible framework for automated aerial measurement of field experiments
    • Beyond ecosystem modeling: a roadmap to community cyberinfrastructure for ecological data-model integration
    • Exosphere - bringing the cloud closer
    • Robust paths to net greenhouse gas mitigation and negative emissions via advanced biofuels
    • TERRA-REF, an open reference data set from high resolution genomics, phenomics, and imaging sensors. Dryad digital repository
    • Transforming ANOVA and regression statistics for meta-analysis
    • UAV-based sorghum growth monitoring: a comparative analysis of LIDAR and photogrammetry
    • BrAPI—an application programming interface for plant breeding applications
    • A new optical remote sensing technique for high-resolution mapping of soil moisture
    • Reply to: brazilian ethanol expansion subject to limitations
    • BETYdb: a yield, trait, and ecosystem service database applied to second‐generation bioenergy feedstock production
    • ForC: a global database of forest carbon stocks and fluxes
    • TERRA-REF data processing infrastructure
    • Brazilian sugarcane ethanol as an expandable green alternative to crude oil use
    • Root volume distribution of maturing perennial grasses revealed by correcting for minirhizotron surface effects
    • Biofuel ecophysiological traits and yields database (betydb, betydb.org)
    • Predictive ecosystem analyzer (PEcAn, pecanproject.org)
    • TERRA reference phenotyping platform database and computing pipeline (terraref.org)
    • Data and code from "nitrogen limitation of net primary productivity in terrestrial ecosystems is globally distributed"
    • Carbon dynamics of mature and regrowth tropical forests derived from a pantropical database (TropForC-db)
    • Plants in silico : why, why now and what?—an integrative platform for plant systems biology research
    • Ten simple rules for digital data storage
    • A holistic workflow development for agricultural supply chain analysis: integration of meteorological forecasting, crop simulation, and supply chain optimization models
    • A physiological and biophysical model of coppice willow (salix spp.) production for the contiguous USA in current and future climate scenarios
    • BioCro crop productivity and ecosystem service simulation model
    • Ecosystem climate regulation services calculator
    • Shiitake cultivation on logs
    • Toward systems-level analysis of agricultural production from crassulacean acid metabolism (CAM): scaling from cell to commercial production
    • Light to liquid fuel: theoretical and realized energy conversion efficiency of plants using crassulacean acid metabolism (CAM) in arid conditions
    • A quantitative assessment of a terrestrial biosphere model's data needs across north american biomes
    • Ecophysiological screening of tree species for biomass production: trade‐off between production and water use
    • On improving the communication between models and data
    • Predicting yields of short‐rotation hybrid poplar (Populus spp.) for the United States through model–data synthesis
    • Facilitating feedbacks between field measurements and ecosystem models
    • Ecological cyberinfrastructure and HPC towards more accurately predicting future levels of greenhouse gases
    • Translating probability density functions : from R to BUGS and back again
    • Water in the energy industry: an introduction
    • Data entry workflow for the biofuel ecophysiological traits and yields database
    • Litter degradation rate and β-glucosidase activity increase with fungal diversity
    • A quantitative review comparing the yield of switchgrass in monocultures and mixtures in relation to climate and management factors
    • Biofuel ecophysiological traits and yields database (betydb)
    • Low levels of nitrogen addition stimulate decomposition by boreal forest fungi
    • Nitrogen limitation of net primary productivity in terrestrial ecosystems is globally distributed
    • Carbon balance of ecosystems under nitrogen enrichment
    • Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil
    • Consider Shiitake Cultivation!
    • Growing Pleurotus tuberregium
  • Publications
    • CCT data science group procedures
    • Adoption of unoccupied aerial systems in agricultural research
    • Data and code from: Unoccupied aerial systems adoption in agricultural research
    • Predicting spring phenology in deciduous broadleaf forests: NEON phenology forecasting community challenge
    • Automating methods for estimating metabolite volatility
    • Early detection of drought stress in durum wheat using hyperspectral imaging and photosystem sensing
    • ESS-DIVE unoccupied aerial systems (UAS) reporting format v1
    • Increasing racial diversity in the north american plant phenotyping network through conference participation support
    • Bison-fly: an open-source UAV pipeline for plant breeding data collection
    • Data from: expanded potential growing region and yield increase for agave americana with future climate
    • Data-driven artificial intelligence for calibration of hyperspectral big data
    • Review and synthesis: the promise of big soil data, moving current practices towards future potential
    • Data and code from: on-farm land management strategies and production challenges in United States organic agricultural systems
    • What does TERRA-REF’s high resolution, multi sensor plant sensing public domain data offer the computer vision community?
    • Ten simple rules to cultivate transdisciplinary collaboration in data science
    • A reporting format for leaf-level gas exchange data and metadata
    • Expanded potential growing region and yield increase for agave americana with future climate
    • Global wheat head detection 2021: an improved dataset for benchmarking wheat head detection methods
    • On-farm land management strategies and production challenges in United States organic agricultural systems
    • An open, scalable, and flexible framework for automated aerial measurement of field experiments
    • Beyond ecosystem modeling: a roadmap to community cyberinfrastructure for ecological data-model integration
    • Exosphere - bringing the cloud closer
    • Robust paths to net greenhouse gas mitigation and negative emissions via advanced biofuels
    • TERRA-REF, an open reference data set from high resolution genomics, phenomics, and imaging sensors. Dryad digital repository
    • Transforming ANOVA and regression statistics for meta-analysis
    • UAV-based sorghum growth monitoring: a comparative analysis of LIDAR and photogrammetry
    • BrAPI—an application programming interface for plant breeding applications
    • A new optical remote sensing technique for high-resolution mapping of soil moisture
    • Reply to: brazilian ethanol expansion subject to limitations
    • BETYdb: a yield, trait, and ecosystem service database applied to second‐generation bioenergy feedstock production
    • ForC: a global database of forest carbon stocks and fluxes
    • TERRA-REF data processing infrastructure
    • Brazilian sugarcane ethanol as an expandable green alternative to crude oil use
    • Root volume distribution of maturing perennial grasses revealed by correcting for minirhizotron surface effects
    • Biofuel ecophysiological traits and yields database (betydb, betydb.org)
    • Predictive ecosystem analyzer (PEcAn, textlessa href=\"pecanproject.org\"textgreaterpecanproject.orgtextless/atextgreater)
    • TERRA reference phenotyping platform database and computing pipeline (textlessa href=\"terraref.org\"textgreaterterraref.orgtextless/atextgreater)
    • Data and code from \"nitrogen limitation of net primary productivity in terrestrial ecosystems is globally distributed\"
    • Carbon dynamics of mature and regrowth tropical forests derived from a pantropical database ( textlessspan style=\"font-variant:small-caps;\"textgreaterTtextless/spantextgreater rop textlessspan style=\"font-variant:small-caps;\"textgreaterFtextless/spantextgreater or textlessspan style=\"font-variant:small-caps;\"textgreaterCtextless/spantextgreater ‐db)
    • Plants textitin silico : why, why now and what?—an integrative platform for plant systems biology research
    • Ten simple rules for digital data storage
    • A holistic workflow development for agricultural supply chain analysis: integration of meteorological forecasting, crop simulation, and supply chain optimization models
    • A physiological and biophysical model of coppice willow (salix spp.) production for the contiguous USA in current and future climate scenarios
    • BioCro crop productivity and ecosystem service simulation model
    • Ecosystem climate regulation services calculator
    • Shiitake cultivation on logs
    • Toward systems-level analysis of agricultural production from crassulacean acid metabolism (CAM): scaling from cell to commercial production
    • Light to liquid fuel: theoretical and realized energy conversion efficiency of plants using crassulacean acid metabolism (CAM) in arid conditions
    • A quantitative assessment of a terrestrial biosphere model's data needs across north american biomes
    • Ecophysiological screening of tree species for biomass production: trade‐off between production and water use
    • On improving the communication between models and data
    • Predicting yields of short‐rotation hybrid poplar ( textitpopulus spp.) for the United States through model–data synthesis
    • Facilitating feedbacks between field measurements and ecosystem models
    • Ecological cyberinfrastructure and HPC towards more accurately predicting future levels of greenhouse gases
    • Translating probability density functions : from R to BUGS and back again
    • Water in the energy industry: an introduction
    • Data entry workflow for the biofuel ecophysiological traits and yields database
    • Litter degradation rate and β-glucosidase activity increase with fungal diversity
    • A quantitative review comparing the yield of switchgrass in monocultures and mixtures in relation to climate and management factors
    • Biofuel ecophysiological traits and yields database (betydb)
    • Low levels of nitrogen addition stimulate decomposition by boreal forest fungi
    • Nitrogen limitation of net primary productivity in terrestrial ecosystems is globally distributed
    • Carbon balance of ecosystems under nitrogen enrichment
    • Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil
    • Consider shiitake cultivation!
    • Consider Shiitake Cultivation!
    • Growing textitpleurotus tuberregium
  • Experience
  • Recent & Upcoming Talks
    • Building a Data Science Support Team
    • Software to Streamline Sharing of Agricultural Algorithms and Data
    • Agriculture in the Digital Age: Challenges and Opportunities
  • Contact
  • David LeBauer, Ph.D.
  • Services
Backlinks
  • TERRA-REF: Building the World's Largest Open-Access Plant Phenotyping Dataset
  • Open Data and Reusable Software: How We Connected Sensors, Traits, and Genomes in TERRA-REF
  • The Four Ts: Tools, Translators, Tutorials, and Templates for Sharing Agricultural Algorithms

TERRA-REF data processing infrastructure

Jan 1, 2018·
Maxwell Burnette
,
Rob Kooper
,
Jd Maloney
,
Gareth S Rohde
,
Jeffrey a Terstriep
,
Craig Willis
,
Noah Fahlgren
,
Todd Mockler
,
Maria Newcomb
,
Vasit Sagan
,
Others
· 0 min read
DOI
Last updated on Jan 1, 2018
← ForC: a global database of forest carbon stocks and fluxes Jan 1, 2018
Brazilian sugarcane ethanol as an expandable green alternative to crude oil use Nov 1, 2017 →
The LeBauer Approach THE LEBAUER APPROACH ECOSYSTEM MODELING · SOIL CARBON · CARBON MRV

Independent scientific consulting in ecosystem modeling, soil carbon, and carbon MRV.

Explore

Services Projects Publications About Contact

Contact

david@davidlebauer.com Book a call
© 2026 David LeBauer · The LeBauer Approach, LLC Content licensed CC BY-SA 4.0